A method was established for the determination of contents of malachite green and it's metabolites in fresh fish meat by HPLC-MS/MS.The electrospray positive-ion mode was applied for ionization and the selective ion monitoring mode (SRM) was used for quantification. The quantitative ion pairs of malachite green and leucomalachite green were 329>313 and 331>239. The detection limits of malachite green and leucomalachite green were 0.0022ng/mL and 0.0433ng/mL,and the limits of quantification of green and leucomalachite green were 0.0073 ng/mL and 0.14ng/mL. The liner ranges of the samples both were 1-10ng/mL and RSD were less than 4% (n=6).