Abstract:To elucidate the microbial community structure of Ningxia traditional sourdough and develop a composite starter culture for dough fermentation, 12 traditionally fermented sourdough samples were collected from north to south across Ningxia. Metagenomic sequencing was performed on six of these samples to analyze their microbial communities. Subsequently, dominant strains were isolated and purified from all 12 samples, preliminarily identified, and then subjected to molecular identification. Their fermentation properties, including acid production rate, acid tolerance, ethanol production capacity, and dough leavening ability, were evaluated. Finally, selected dominant strains were combined in different formulations, and the dough leavening ability as well as the free amino acid composition of the fermented dough were determined.Results showed that the microbial communities in the six sourdough samples were dominated by lactic acid bacteria (LAB) and yeasts as core microbiota. Bacterial communities exhibited significant compositional differences, with dominant bacteria including Fructilactobacillus sanfranciscensis (24.54%), Pediococcus acidilactici (15.99%), Pediococcus pentosaceus (8.20%), and Leuconostoc mesenteroides (7.69%). Fungal communities were relatively uniform, largely dominated by Saccharomyces cerevisiae (90.99%), except for one sample where Candida zeylanoides (73.73%) prevailed. Through isolation and culture, a total of 26 LAB and 18 yeast strains were obtained from the 12 sourdough samples. Preliminary screening based on acid production capacity identified 10 LAB strains with acid production ≥15 g/L, indicating high acid-producing potential. Screening based on gas production capacity identified 11 yeast strains that filled more than three quarters of a Durham tube within 12 h, demonstrating rapid and efficient gas production. PCR amplification and sequencing of the 21 preliminarily screened strains (11 yeasts, 10 LAB) revealed that the 11 yeast strains belonged to three genera: seven were Saccharomyces cerevisiae, one was Pichia kudriavzevii, one was Clavispora lusitaniae, and two were Saccharomyces boulardii.Among the 10 LAB strains, eight were Pediococcus acidilactici and two were Lactiplantibacillus plantarum. Evaluation of acid production rates led to the selection of two LAB strains for co fermentation experiments. Evaluation of acid tolerance, ethanol production capacity, and dough leavening ability led to the selection of three yeast strains. The selected strains – two LAB (Lactiplantibacillus plantarum M6 1, Pediococcus acidilactici M10 1) and three yeasts (Pichia kudriavzevii Y1 1, Saccharomyces cerevisiae Y6 2, and Saccharomyces boulardii Y10 2) – were used to construct 25 different consortia. Results of the co fermentation experiments showed that the four strain combination (M6 1, M10 1, Y6 2, Y10 2) exhibited the best dough leavening performance and also yielded the highest total free amino acid content in the fermented dough, reaching 1253.24 mg/kg. This consortium demonstrates good application potential in fermented flour based product manufacturing and confirms the synergistic effect of LAB and yeasts as the core functional microbiota in sourdough. This study provides valuable strain resources and a theoretical basis for the development of composite starter cultures for traditional flour based products.