Abstract:In order to explore the effects of germination treatment on the physicochemical properties and structural characteristics of brown rice (2 Japonica rice and 2 glutinous rice), several advanced analytical techniques, including infrared spectroscopy, X-ray diffraction, Raman spectroscopy, differential scanning calorimetry, and rapid visco-analysis, were utilized to analyze the changes in amylose content, amylopectin content, reducing sugar content, and α-amylase activity of Japonica rice and glutinous rice germinated for 0h, 24h, and 48h. Meanwhile, quantitative real-time PCR technology was used to analyze the expression patterns of starch metabolism-related genes during germination at the molecular level. The changes in starch crystal structure and gelatinization properties were also investigated. The results showed that the ash content of glutinous rice reached its peak value at 24h of germination, with Songnianyihao at 1.60% and Zhongbaojianuo at 1.80%, while that of Japonica rice exhibited a decreasing trend with the extension of germination time. Under the same germination time treatment, glutinous rice had higher contents of amylopectin and reducing sugars, as well as higher α-amylase activity compared with Japonica rice. Quantitative real-time PCR results indicated that the gene OsAMY1 might dominate the regulation of α-amylase activity in brown rice, thereby promoting the starch hydrolysis of brown rice. Germination led to a significantly higher relative expression level of the OsAMY1 gene in Zhongbaojianuo compared with Japonica rice. This up-regulated expression resulted in increased α-amylase activity, which ultimately contributed to a higher reducing sugar content in Zhongbaojianuo compared with Japonica rice. Germination treatment reduced the short-range molecular order of starch in the four brown rice varieties, with the most significant change observed in glutinous rice variety Zhongbaojianuo, where R1047/1022 decreased by 27.30% and the full width at half height value FWHH increased by 17.44%. The relative crystallinity of starch in 4 brown rice varieties decreased after germination, with the most notable decline of 50.49% (Songnianyihao) and 28.85% (Zhongbaojianuo) observed in glutinous rice. And germination treatment also had an impact on gelatinization properties. As germination progressed, the gelatinization enthalpy of Japonica rice decreased, while that of glutinous rice increased. The gelatinization viscosity of all four brown rice varieties showed a downward trend, and glutinous rice exhibited better retrogradation resistance and stronger thermal stability. Principal component analysis revealed that the up-regulated OsAMY1 gene activated α-amylase activity, thereby accelerating the transformation of starch molecules into amorphous structures and enhancing the retrogradation resistance and thermal stability of Japonica and glutinous rice. This study provided an evidence-based foundation for optimizing the processing adaptability and guiding the product development of both Japonica and glutinous rice.